Beans to run BoneJ+ are now available from
BeanCounter.ch
Make sure to update BoneJ to at least 7.1.9 and bonej-plus to 0.0.13 (2025-12-04)
| Program | Description | Bean usage rate |
|---|---|---|
| BoneJ+, GPU accelerated extensions for BoneJ | ||
| Thickness+ | Calculates the local thickness of every point inside the structure as the diameter of the largest sphere that fits within the structure and contains the point. For bone this is the standard method to determine thickness (Tb.Th) and separation (Tb.Sp). | 100 beans per million pixels |
| Anisotropy+ | Estimates the degree of anisotropy of binary 3D textures, a measure of the orientation of the substructures using the mean intercept length method. Runs until user-set coefficient of variation is achieved. Around 600-2000 random vectors are sufficient to get a stable estimate. | 1 bean per vector |
| Ellipsoid Factor+ | Fits ellipsoids inside foreground structures of binary 3D images to measure their rod-plate nature. Around 1000 ellipsoids per million pixels give a robust measurement. See doi:10.3389/fendo.2015.00015 | 1 bean per ellipsoid fitted |
| Medial Ridge | Calculates the medial ridge of a 3D structure using the difference between open and close operations on the Euclidean distance transform of the input image. | 10 beans per million pixels |
| Skeletonize 3D+ | Topology-preserving medial axis skeletonization, GPU implementation of Fiji's Skeletonize3D | 10 beans per million pixels |